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Example Use Cases

Explore real research sessions powered by K-Dense Web across genomics, drug discovery, machine learning, and more.

Showing 45 of 45 use cases
Natural Products Chemical Space
Drug Discovery

Natural Products Chemical Space

Cluster 715K+ compounds from the COCONUT database to identify bacterial-derived drug candidates using ML dimensionality reduction.

Macroeconomic Recession Prediction
Economics

Macroeconomic Recession Prediction

Predict US recessions at 3, 6, and 12-month horizons using FRED macroeconomic indicators with XGBoost and Bayesian models.

Longevity Gene Analysis
Genomics

Longevity Gene Analysis

Map model organism longevity genes to human orthologs and evaluate their validation through GWAS studies.

JWST Exoplanet Target Prioritization
Astronomy

JWST Exoplanet Target Prioritization

Rank 124 habitable zone exoplanets for JWST atmospheric characterization using TSM/ESM metrics and observability windows.

Quantum Chemistry VQE Benchmarking
Quantum Chemistry

Quantum Chemistry VQE Benchmarking

Benchmark variational quantum eigensolver algorithms for molecular simulations on H₂, LiH, BeH₂, and H₂O systems.

Doxorubicin Mechanism of Action
Cancer Biology

Doxorubicin Mechanism of Action

Elucidate doxorubicin's mechanism in MCF7 cells through differential expression, pathway enrichment, and drug connectivity.

ECG Stress Detection Pipeline
Biosignals

ECG Stress Detection Pipeline

Build HRV-based stress classifier from WESAD ECG data achieving 97% accuracy with XGBoost and Random Forest models.

Lycopene Biosynthesis Optimization
Synthetic Biology

Lycopene Biosynthesis Optimization

Optimize enzyme expression ratios for lycopene production in E. coli using FBA and kinetic bottleneck analysis.

Epigenetic Clock Drug Discovery
Epigenetics

Epigenetic Clock Drug Discovery

Identify master transcription factors regulating 866 epigenetic clock CpG sites and map FDA-approved drug targets.

GLP-1 Drug Patent Landscape
Pharma/IP

GLP-1 Drug Patent Landscape

Map publication-patent relationships for GLP-1 agonists like Semaglutide and Tirzepatide to identify prior art timing.

Biodegradable Polymer Safety Analysis
Biomedical Materials

Biodegradable Polymer Safety Analysis

Analyze FDA adverse events for biodegradable orthopedic implants and create polymer selection decision framework.

ICD Adverse Events Analysis
Medical Devices

ICD Adverse Events Analysis

Analyze 10,000 FDA MAUDE reports for implantable cardioverter defibrillators to identify failure modes by manufacturer.

Nanoparticle Protein Corona Prediction
Nanomedicine

Nanoparticle Protein Corona Prediction

Build ML models to predict protein corona composition on gold nanoparticles using physicochemical properties.

MS Fragmentation Rule Mining
Mass Spectrometry

MS Fragmentation Rule Mining

Discover fragmentation patterns from 1,267 GNPS spectra with FDR-corrected statistical enrichment analysis.

Wearable Seizure Prediction
Neuroscience

Wearable Seizure Prediction

Explore heart-brain coupling for seizure prediction using EEG/ECG analysis and phase-amplitude coupling methods.

Air Quality Health Impact Analysis
Environment

Air Quality Health Impact Analysis

Analyze EPA AQI data to predict air quality categories and explore respiratory health impacts using XGBoost classification.

LC-MS Ion Suppression Prediction
Metabolomics

LC-MS Ion Suppression Prediction

Predict ion suppression factors in LC-MS metabolomics using chromatographic context features and SHAP interpretability.

Agent Skills vs MCP Architecture
AI/Technical

Agent Skills vs MCP Architecture

Technical comparison of Claude Agent Skills and Model Context Protocol architectures for AI tool integration.

TMT Proteomics Spike-in Validation
Proteomics

TMT Proteomics Spike-in Validation

Validate TMT 6-plex quantification accuracy using Erwinia carotovora spike-in proteins with 97% correlation to ground truth.

T2-Low Asthma Endotype Discovery
Genomics

T2-Low Asthma Endotype Discovery

Identify molecular endotypes in 679 asthma patients using nasal airway RNA-Seq and pathway-based clustering.

Caribbean CBI Tax Strategy
Finance/Legal

Caribbean CBI Tax Strategy

Optimize Caribbean citizenship-by-investment strategy for a family of 6 with $1M budget across 5 CARICOM jurisdictions.

HNSCC Treatment Response Biomarkers
Cancer Biology

HNSCC Treatment Response Biomarkers

Build ML classifier for head and neck cancer treatment response using 270 patient samples with AUC=0.76.

Tox21 Liver Toxicity Prediction
Toxicology

Tox21 Liver Toxicity Prediction

Predict liver toxicity using Tox21 SR-MMP endpoint with XGBoost and SHAP-based structural interpretation.

US Vineyard Location Analysis
Agriculture

US Vineyard Location Analysis

Evaluate AVAs for Tempranillo/Cabernet Franc blend with $5M budget across terroir, climate, and business factors.

Aravali Mountains Impact Prediction
Environment

Aravali Mountains Impact Prediction

Model environmental impacts of policy changes on India's Aravali ranges with climate, air quality, and groundwater projections to 2050.

Indian Vegetarian Diet Optimization
Nutrition

Indian Vegetarian Diet Optimization

Generate nutritionally optimized 7-day meal plans for urban Indians across activity levels with regional diversity.

East vs West Cultural Analysis
Social Science

East vs West Cultural Analysis

Quantify individualism-collectivism cultural differences using Hofstede dimensions and World Happiness Report data.

Renal Cancer Drug Response Stratification
Cancer Biology

Renal Cancer Drug Response Stratification

Stratify 97 ccRCC patients by predicted response to standard therapies and identify drug repurposing candidates.

Indian State Emigration Patterns
Demographics

Indian State Emigration Patterns

Analyze state-wise emigration drivers with diaspora networks explaining 78% of variance using panel regression.

50m Concrete Dome Structural Analysis
Engineering

50m Concrete Dome Structural Analysis

Design and cost-estimate a 50m span concrete dome for Sydney using membrane stress analysis and Australian Standards.

India Urban Air Pollution Tipping Points
Environment

India Urban Air Pollution Tipping Points

Detect pollution tipping points in Indian metros using Mann-Kendall tests and forecast PM2.5 to 2026 with Holt-Winters.

India vs China AI Research Analysis
Scientometrics

India vs China AI Research Analysis

Compare AI research productivity and impact between India and China using OpenAlex bibliometric data (2019-2024).

India Sacred Tree Tourism Strategy
Tourism/Economics

India Sacred Tree Tourism Strategy

Develop tourism potential model for India's heritage trees benchmarked against California Redwoods with $233M revenue opportunity.

India Crop Yield Prediction
Agriculture

India Crop Yield Prediction

Build Random Forest models for crop yield and soil fertility prediction across 33 Indian states with 71% test R².

Solar Green Hydrogen Thermal Analysis
Energy

Solar Green Hydrogen Thermal Analysis

Quantify thermal degradation effects on PV-electrolyzer systems in Rajasthan comparing Alkaline vs PEM technologies.

India EV Adoption Econometrics
Transportation

India EV Adoption Econometrics

Panel regression shows charging infrastructure has 1.76x stronger impact than subsidies on 2-wheeler EV adoption.

Carbon Removal Investment Pipeline
Climate Tech

Carbon Removal Investment Pipeline

Map $176M in CDR grants to patents and startups, identifying 5 investment opportunities across DAC, OAE, and enhanced weathering.

Infrastructure Impact on Women's Empowerment
Social Science

Infrastructure Impact on Women's Empowerment

Analyze how road, electricity, and digital infrastructure affect female labor force participation using Indian Census and NFHS data.

NGS Variant Callers in Clinical Practice
Genomics

NGS Variant Callers in Clinical Practice

Comprehensive review of germline and somatic variant callers for clinical genomics with ACMG/AMP classification frameworks.

New Zealand Great Walks Planning
Travel

New Zealand Great Walks Planning

Complete 65-day itinerary for hiking all 11 NZ Great Walks with $14K budget, transport strategy, and 12-week training program.

Flying Dutchman Historical Analysis
Maritime History

Flying Dutchman Historical Analysis

Investigate the Flying Dutchman legend's origins in Bernard Fokke's VOC voyages and the Brouwer Route navigation strategy.

Great Pyramid Construction Analysis
Engineering

Great Pyramid Construction Analysis

Mathematical feasibility assessment of pyramid construction theories including hybrid ramps and counterweight-pulley mechanisms.

AI Predictions 2026
AI/Technical

AI Predictions 2026

Data-driven analysis of AI trends covering agents, LLMs, compute infrastructure, regulation, and $500B+ market investment.

Deadliest Animal Venoms Safety Guide
Biology/Safety

Deadliest Animal Venoms Safety Guide

Emergency response guide for the 5 deadliest venoms: cone snail, box jellyfish, wandering spider, inland taipan, and funnel-web.

PDAC KRAS Mutation Survival Analysis
Cancer Biology

PDAC KRAS Mutation Survival Analysis

Analyze KRAS variant distribution and survival outcomes in 2,336 pancreatic adenocarcinoma patients from MSK cBioPortal data.

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